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    ITC reporting in GSTR-9: GSTR-2A Reconciliation, Challenges & Clarifications

    Updated on: 16 Dec, 2024 04:40 PM

    A user faces many issues relating to settlement, disclosure, etc, of Input Tax Credit (ITC) at the time of GSTR 9 Annual Return Filing. We provide you with a comprehensive solution to all such queries you have been witnessing so far.

    What is GSTR-9 annual return?

    GSTR-9 is an annual return mandated for all GST-registered taxpayers. This crucial document provides a year-end summary of all business transactions as follows:

    • Detailed records of goods and services sold and purchased, categorized by CGST, SGST, IGST, cess, and HSN codes.
    • Consolidated Overview: GSTR-9 serves as a single point of reference, consolidating information from all monthly/quarterly returns (GSTR-1, GSTR-2A, GSTR-2B, and GSTR-3B) filed throughout the year.
      While the filing process may be complex, this return enables thorough data reconciliation, ensuring 100% transparent disclosures.

    What is GSTR-2A Reconciliation?

    GSTR-2A Reconciliation is the process of matching the invoices available in the GSTR-2A form with the invoices recorded by a business in its books. This process helps businesses identify discrepancies between the data reported by suppliers and the data recorded by the recipient of the supplies.

    The GSTR-2A form is an auto-drafted statement that contains details of purchases made by a taxpayer from registered suppliers. It is generated based on the information provided by suppliers in their GSTR-1 forms. By reconciling GSTR-2A, businesses can ensure the accuracy of their Input Tax Credit (ITC) claims, maintain compliance with GST regulations, and avoid potential penalties.

    Regular reconciliation helps in:

    • Ensuring ITC accuracy
    • Maintaining compliance with GST regulations
    • Reducing errors in GST returns
    • Improving financial reporting
    • Avoiding unintended tax liabilities

    Conditions for Availing Input Tax Credit (ITC) as per GSTR-2A

    Under the GST law, claiming Input Tax Credit (ITC) is subject to specific conditions, regardless of the information reflected in GSTR-2A.

    Section 16 of the CGST Act, in conjunction with Rule 36, outlines the eligibility criteria for ITC:

    • Receipt of Goods/Services: The recipient must have received the goods or services along with the tax invoice and other required documents.
    • Tax Payment Evidence: The taxes pertaining to the supply must have been paid to the government.

    To ensure a robust defense for ITC claims, businesses are advised to obtain a "tax-paid confirmation letter" from their suppliers. This letter serves as written proof of tax payment to the government, strengthening the recipient's claim for ITC.


    Challenges in ITC Reconciliation in GSTR-9

    Significant discrepancies often arise between the Input Tax Credit (ITC) reflected in auto-generated GSTR-2A and the ITC reported in GSTR-9. Key reasons for these mismatches include:

    • GSTR-1 Filing Dependence:
      • GSTR-2A relies on supplier-filed GSTR-1. Missing GSTR-1 filings lead to exclusion of related ITC in GSTR-9.
      • ITC for supplies beyond the GSTR-1 filing due date is not automatically populated in GSTR-9.
    • Place of Supply Discrepancies: ITC on invoices where the place of supply is the supplier's state (not the recipient's) may not be accurately reflected.
    • Composition Scheme Impact: ITC on invoices issued during periods when the recipient was under the composition scheme is not included in GSTR-9.
    • GSTR-2A Limitations: GSTR-2A often omits legitimate ITC claims, leading to unwarranted disallowances and notices from tax authorities.

    Other ITC Reconciliation challenges in GSTR-9:

    • Bifurcation Challenges: Difficulty in bifurcating Input Service Credit (ISC) and capital goods as required by GSTR-9 rules, especially when proper documentation is lacking.
    • Table Overlap: Overlapping data between Table 6(B) (inward supplies) and Table 6(H) (refunded/reversed ITC) due to reporting requirements.
    • Negative Value Limitations: The inability to input negative values in certain tables (5M, 5N, 5O) through the online GSTR-9 facility.
    • GST DRC-03 Reflection: Issues with GSTR-9 not reflecting GST DRC-03 adjustments, hindering successful filing despite adjustments.
    • Missing Invoices: Supplier failures to upload invoices in GSTR-1 frequently lead to ITC losses for recipients.
    • Post-GSTR-1 Modifications: Discrepancies arise due to modifications made to invoices after GSTR-1 filing, requiring manual reconciliation.
    • Interpretation Variations: Differing interpretations of GST laws among taxpayers contribute to reconciliation challenges.

    How to ensure correct input tax credit reconciliation

    To help you ensure accurate input tax credit reconciliation, we've compiled the following tips:

    • Track all transactions, including details of returns filed (GSTR-3B and GSTR-2A).
    • Regularly compare the ITC claimed in GSTR-3B with the ITC available in GSTR-2A.
    • Look for missing invoices, amendments, data entry errors, etc.
    • Contact vendors and file necessary return amendments.
    • Reconcile ITC before filing to ensure accuracy.
    • Leverage GST-compliant software and tools for automated reconciliation.
    • Conduct periodic ITC reviews and reconciliations throughout the financial year.

    Consult tax professionals for assistance with complex ITC reconciliation and accurate annual returns.


    Frequently Asked Questions

    Q- What shall be the disclosure in Annual Return for the Disputed Credit availed and reversed under the protest?

    The GST law does not provide for the reversal of credit under protest. Hence, there is no separate disclosure available in the Annual Return for the same. The registered person may file a separate communication with the jurisdictional officer for such reversals made, and no separate disclosure can be made in the Annual Return.


    Q- What if CGST and SGST credits have been availed as IGST credits? How can the same be rectified in the Annual Return?

    Circular No.26/2017 dated 29.12.2017 provides that such transactions can be rectified wherein the assessee needs to reverse the credit improperly availed and re-avail the correct credit through adjustments in the subsequent GSTR-3B, and correct credit needs to be disclosed under the appropriate heads under Sl. No.6 under Part III of the Annual Return.


    Q- Whether credit of invoices not appearing in the GSTR-2A be reversed in the Annual Return?

    Sl. No.8 under Part III appears to provide for disclosure of additional information required to be reported by the Assessee, with respect to matching of credit balances with Form GSTR-2A. There is no specific requirement for reversal of credit on account of invoices not reported in Form GSTR-2A. However, the details reported in Sl. No.8 would become the basis for the Department to determine in case of input tax credit availed in excess of credits reported in Form GSTR-2A.


    Q- Input tax credit has been shown in the books of account but not shown in the GSTR-3B. Are some adjustments required to be made to the annual return?

    Annual Return provides for reporting of such transactions that have been reported in the monthly returns. Credits availed in books of accounts and not reported in Form GSTR-3B shall not be reported in the Annual Return. Such credit would be reported in the GSTR-9C, and the difference has to be explained by the auditor.


    Q- In the absence of data integration with ICEGATE, can whether IGST credit availed also be compared with Form GSTR-2A?

    Sl. No.8 under Part III, which requires disclosure of certain additional details, compares the credit reported under Sl. No. 6(B) and does not include IGST credit availed on the import of goods. Such credit has to be separately reported by the registered person.


    Q- What shall be the disclosure of Transitional credits made in Form GSTR-3B filed in FY 2018-19?

    The form provides for reporting of actual reversals made in Form GSTR-3B for the FY 2017-18. Reversals made during FY 2018-19 w.r.t. FY 2017-18 would be required to be reported as part of the Annual return for FY 2018-19.


    Q- Can credits appearing in GSTR-2A whose physical invoice is not available, be availed in the Annual Return?

    Credits in annual returns are reported on the basis of GSTR 3B filed by the taxpayer under Part III Sl. No.6. Later, if an assessee finds some other credits missed to be claimed as per GSTR 2A, and the same matches with his own records. It shall be reported in GSTR 3B till the month of September.

    The credits shall always be supported by a copy of the invoice or equivalent document. In the absence of this, the taxpayers may not be allowed to avail of the ITC.


    Q- Is it mandatory to bifurcate input tax credit between inputs, input service, and capital goods?

    Yes, Sl. No.6 under Part III requires the bifurcation of input tax credit availed under inputs, input services, and capital goods.


    CA Abhishek Soni
    CA Abhishek Soni

    Abhishek Soni is a Chartered Accountant by profession & entrepreneur by passion. He is the co-founder & CEO of Tax2Win.in. Tax2win is amongst the top 25 emerging startups of Asia and authorized ERI by the Income Tax Department. In the past, he worked in EY and comes with wide industry experience from telecom, retail to manufacturing to entertainment where he has handled various national and international assignments.

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