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What is GST Amnesty Scheme?

Updated on: 22 Oct, 2024 03:13 PM

The introduction of GST in July 2017 marked a significant shift in India’s indirect tax system. The initial implementation phase was characterized by a wave of notifications and sudden changes, challenging taxpayers and tax professionals across the country. Despite the rapid adaptation, errors and technical glitches were inevitable during this transition period. Recognizing these challenges, the 53rd GST Council Meeting proposed a conditional waiver of interest and/or penalty for the initial years of GST implementation (FY 2017-18 to FY 2019-20). This scheme, known as the Amnesty Scheme, aimed to provide relief to taxpayers affected by teething troubles and technical difficulties.

Implementation of Section 128A and Introduction of Rule 164 in the CGST Act

Section 128A, introduced through the Finance (No. 2) Act, 2024, was added to the CGST Act, 2017 following the recommendations from the 53rd GST Council Meeting, with Notification 17/2024 – Central Tax, making it effective from November 1, 2024. In line with the 54th GST Council Meeting's suggestions, Rule 164 has now been incorporated into the CGST Rules, 2017 via Notification No. 20/2024 – Central Tax dated October 8, 2024, and will also come into effect on November 1, 2024. This rule lays down the procedures, terms, and conditions to benefit from Section 128A, including specified forms.

Additionally, March 31, 2025, has been set as the deadline for the payment of tax to qualify for Section 128A benefits, as per Notification No. 21/2024 – Central Tax dated October 8, 2024. The government will issue further clarifications in a forthcoming circular, but this has not yet been released.


Who is Eligible for Waiver of Interest and/or Penalty?

Section 128A(1) outlines three categories of individuals eligible for the waiver scheme:

Those liable to pay tax based on:

  • A Show Cause Notice under Section 73(1) or a statement under Section 73(3).
  • An Adjudication Order under Section 73(9).
  • An Order issued by the Appellate Authority or Revisionary Authority under Section 107(11) or Section 108(1).

Also, the first proviso to Section 128A(1) extends eligibility to cases where the original notice was issued under Section 74(1), but the proper officer has been directed under Section 75(2) to reassess the tax under Section 73(1).

Further Eligibility Conditions:

(A) The Notice or Order must relate to the period from 1st July 2017 to 31st March 2020.

(B) The individual must have paid the full tax amount stated in the notice, statement, or order before the notified date.


Deadlines for Payment and Filing under the Waiver Scheme

The timelines for tax payment have been set by Notification No. 21/2024 – Central Tax dated 08.10.2024, with the following provisions:

  • The general deadline for tax payment is 31.03.2025.
  • If tax is being re-determined under Section 73 instead of Section 74, based on an order under Section 75(2), the payment deadline will be six months from the date the re-determination order is issued by the proper officer under Section 73.

Deadlines for Filing the Waiver Application

Rule 164(6) specifies the final dates for applying under the waiver scheme:

  • In standard cases, the last date for submitting an application is 30.06.2025.
  • For cases involving re-determination, the deadline is six months from the date the re-determination order is communicated by the proper officer under Section 73.

When Does the GST Amnesty Scheme Not Apply?

The waiver scheme shall not apply in the following cases:

  • For any amount payable due to an erroneous refund, as specified under Section 128A (2).
  • If there is a pending appeal or writ petition filed by the person, and the applicant has not withdrawn it, in accordance with Section 128A (3).

Benefits of GST Amnesty Scheme

The GST Amnesty Scheme offers several key benefits:

  • It promotes compliance among defaulters by encouraging adherence to tax regulations, leading to a more stable and predictable revenue stream for the government.
  • Provides financial relief to taxpayers burdened with late fees, allowing them to reinvest saved funds into their business for growth and operational improvements.
  • Enables businesses with cancelled GST registrations due to non-filing to re-register, while also allowing taxpayers to clear pending returns without incurring steep interest charges.
  • Significantly reduces penalties for taxpayers filing overdue GST returns, helping them address backlogs and meet regulatory requirements.
  • Facilitates the updating of tax records without hefty penalties, easing the administrative burden on both tax authorities and taxpayers for smoother operations.

Procedure for Filing a Waiver Application

Rule 164 outlines the steps for filing a waiver application and conducting subsequent proceedings, detailing 17 sub-rules and 8 forms. These sub-rules encompass both procedural requirements and essential conditions. To simplify understanding, the process can be examined step-by-step as follows:

S. No. Process Form Rule Comments/ Important Instructions
1 Application under Section 128A (1) (a) GST SPL 01 164 (1) For waiver of notice or Statement.
2 Application under Section 128A (1) (b) or (1) (c) GST SPL 02 164 (2) For waiver of demand order, appeal, or revision order.
3 Show Cause Notice GST SPL 03 164 (8) States reasons for rejection, short payment, and hearing date.
4 Reply to Show Cause Notice GST SPL 04 164 (9) Must be filed within one month with supporting documents.
5 Order for Conclusion of Proceedings GST SPL 05 164 (10) Issued when application or reply is admitted/allowed.
6 Order for Rejection of Application GST SPL 07 164 (12) States reasons for rejection and is appealable.
7 Order passed by the proper officer on appeal GST SPL 06 164 (15) (b) (i) Issued when appeal is allowed.
8 Undertaking for restoration of Appeal GST APL 08 164 (15)(b)(ii) Given within three months of rejection order.

Frequently Asked Questions

Q- What is the GST amnesty Scheme 2024?

India's new Goods and Services Tax (GST) amnesty scheme is set to take effect on November 1, 2024. This initiative provides relief to taxpayers with outstanding GST demands from the period of 2017-18 to 2019-20, waiving interest and penalties for non-fraudulent cases.


Q- What is the validity period of amnesty scheme?

The GST Amnesty Scheme for 2022 is effective from April 1 to September 30, 2022. This means that taxpayers with outstanding filings during this period can take advantage of the benefits offered.


Q- Is there any amnesty scheme for GSTR-9?

Yes, the CBIC has announced an amnesty scheme through Notification 07/2023 dated March 31, 2023. This scheme provides a waiver of late fees exceeding ₹20,000 (₹10,000 each under the CGST and SGST Acts) for the delayed filing of GSTR-9.


CA Abhishek Soni
CA Abhishek Soni

Abhishek Soni is a Chartered Accountant by profession & entrepreneur by passion. He is the co-founder & CEO of Tax2Win.in. Tax2win is amongst the top 25 emerging startups of Asia and authorized ERI by the Income Tax Department. In the past, he worked in EY and comes with wide industry experience from telecom, retail to manufacturing to entertainment where he has handled various national and international assignments.